PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00909g05015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NF-YB
Protein Properties Length: 161aa    MW: 17417.4 Da    PI: 5.0277
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00909g05015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB170.71.6e-5324117194
                     NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 
                               +reqdr+lPian++rimkk lP+n+ki+kd+k+tvqecvsefisf+tseasdkcqrekrktingddll+alatlGfedy+eplk+
  Peinf101Scf00909g05015.1  24 MREQDRYLPIANIGRIMKKGLPSNGKIAKDSKDTVQECVSEFISFITSEASDKCQREKRKTINGDDLLHALATLGFEDYIEPLKI 108
                               59*********************************************************************************** PP

                     NF-YB  86 ylkkyrele 94 
                               yl++yre +
  Peinf101Scf00909g05015.1 109 YLTRYREGD 117
                               ******965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.2E-5021119IPR009072Histone-fold
SuperFamilySSF471131.55E-3727122IPR009072Histone-fold
PfamPF008081.0E-263094IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.8E-205876No hitNo description
PROSITE patternPS0068506177IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.8E-207795No hitNo description
PRINTSPR006153.8E-2096114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MAEAASPGGG GGHEESGGSP QCSMREQDRY LPIANIGRIM KKGLPSNGKI AKDSKDTVQE  60
CVSEFISFIT SEASDKCQRE KRKTINGDDL LHALATLGFE DYIEPLKIYL TRYREGDAKG  120
SAMVGDASVR KDIVGNQLGP NTQFVYEGSF AQGLDYGNSQ M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B9e-4824115192Transcription factor HapC (Eurofung)
4g92_B9e-4824115192Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604648.14e-92PREDICTED: nuclear transcription factor Y subunit B-10-like
SwissprotQ8VYK42e-69NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0V0I0W41e-91A0A0V0I0W4_SOLCH; Putative transcription factor NF-Y CCAAT-binding-like protein-like
TrEMBLQ2XTB91e-91Q2XTB9_SOLTU; Transcription factor NF-Y CCAAT-binding-like protein-like
STRINGSolyc04g049910.2.12e-90(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.11e-67nuclear factor Y, subunit B10